Sury,
I bought a 1098S and upgraded to the full termi, along w/ some clutch bling upgrades. when all was said and done i spent close to 25K. It hasn't escaped my notice that for this kind of change i could have bought an F4, (true, only the base model, but an F4 nonetheless!). And for another 2K you can get the upgraded F4.
By the time you upgrade the 1098 to an "S" to get the right suspension and rims, and then buy the right exhuast, you've spent enough for the MV. And the MV comes w/ the right exhaust and suspension and wheels, right out of the box. It's a tough call. IMO the MV is the only bike in the world that makes a Duc look like a Plain Jane.
Service and reliability is another issue. Servicing the MV makes Ducati service seem like a bargain.
I don't know, close call. You really can't go wrong either way. In the end you have to ask yourself whether you like the endless gobs of linear power you get from a V twin, or whether you prefer the arm wrenching power band of a transverse in-line 4. There's nothing quite like the sudden onslought of power when you hit 5,000 rpm on a 1 liter in-line 4. Hang on!!!!
If this is the kind of choice your debating consider yourself fortunate.