It seems we are discussing two different problems here. One, the OPs low speed, 5MPH or less parking lot wobble. Two, a wobble at 30 MPH peculiar to 09 bikes. These are NOT the same problem.
My 08 does the 5 MPH parking lot wobble as well. Everything is tight. Haven't checked the front rotor run out, wouldn't be surprised if that is the problem because now that you mention it and memory serves me correctly, I only notice it when using the front brake. Must investigate this further. I do not think it is a safety issue,(just got back from 4000 mile trip) but like the OP said, it is irritating when it occurs. Otherwise the bike rides great, haven't even noticed any wobbles at speed to speak of. I have possibly detected the beginnings of the "high speed wobble" the bagger brace and others like it are supposed to correct, but have just let off the throttle and it stopped. (I live in the Ozark Mtns, not too many long sweepers I can take at 80+ MPH to check for this, and I ride pretty easy anyway.)
Just wondering "smithbrl", When I lightly apply the front brake, I get a pulse type feedback from the front brake. Was already thinking it might be warped a little, but hadn't tied the wobble to the warped rotor problem. Mine is no longer under warranty so I'm gonna live with it.
Late entry: I think oldbagr may have hit the nail on the head. (still wonder about the rotor though.)